#!/bin/sh

WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM

axe-demux \
	-t ${WORKDIR}/gbs.tab \
	-c \
	-b tests/data/gbs.barcodes \
	-f tests/data/gbs_R1.fastq.gz \
	-r tests/data/gbs_R2.fastq.gz \
	-I ${WORKDIR}/gbs-demux

test -f ${WORKDIR}/gbs.tab
